Detailed information of SNP:
|
SNP ID:
sf1013471750(Gbrowse)
Chromosome: chr10 Position: 13471750 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 59.36% | 40.64% |
| All Indica | 797 | 30.87% | 69.13% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 33.51% | 66.49% |
| Indica II | 213 | 15.96% | 84.04% |
| Indica Intermediate | 211 | 41.23% | 58.77% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013471750 | T->A | INTERGENIC | None |