Detailed information of SNP:
|
SNP ID:
sf1013475187(Gbrowse)
Chromosome: chr10 Position: 13475187 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 83.07% | 16.93% |
| All Indica | 799 | 70.34% | 29.66% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 66.93% | 33.07% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 59.24% | 40.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013475187 | A->T | LOC_Os10g26140(LOC_Os10g26140.1) | Non-Synonymous SNP |
| sf1013475187 | A->T | LOC_Os10g26140(LOC_Os10g26140.3) | Non-Synonymous SNP |
| sf1013475187 | A->T | LOC_Os10g26140(LOC_Os10g26140.2) | Non-Synonymous SNP |
| sf1013475187 | A->T | LOC_Os10g26145(LOC_Os10g26145.1) | Non-Synonymous SNP |