Detailed information of SNP:
|
SNP ID:
sf1013508333(Gbrowse)
Chromosome: chr10 Position: 13508333 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 70.17% | 29.83% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 496 | 20.36% | 79.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 3.29% | 96.71% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013508333 | G->A | LOC_Os10g26210(LOC_Os10g26210.1) | Non-Synonymous SNP |