Detailed information of SNP:
|
SNP ID:
sf1013508346(Gbrowse)
Chromosome: chr10 Position: 13508346 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1285 | 70.19% | 29.81% |
| All Indica | 692 | 50.43% | 49.57% |
| All Japonica | 494 | 99.80% | 0.20% |
| Aus | 47 | 48.94% | 51.06% |
| Indica I | 319 | 55.80% | 44.20% |
| Indica II | 173 | 30.64% | 69.36% |
| Indica Intermediate | 200 | 59.00% | 41.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013508346 | C->T | LOC_Os10g26210(LOC_Os10g26210.1) | Non-Synonymous SNP |