Detailed information of SNP:
|
SNP ID:
sf1013512515(Gbrowse)
Chromosome: chr10 Position: 13512515 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 71.99% | 28.01% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 474 | 22.78% | 77.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 314 | 6.69% | 93.31% |
| Tropical Japonica | 93 | 66.67% | 33.33% |
| Japonica Intermediate | 67 | 37.31% | 62.69% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013512515 | T->C | LOC_Os10g26220(LOC_Os10g26220.1) | Synonymous |