Detailed information of SNP:
|
SNP ID:
sf1013552780(Gbrowse)
Chromosome: chr10 Position: 13552780 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 54.54% | 45.46% |
| All Indica | 799 | 76.85% | 23.15% |
| All Japonica | 488 | 14.14% | 85.86% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 72.80% | 27.20% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 85 | 48.24% | 51.76% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013552780 | A->G | INTERGENIC | None |