Detailed information of SNP:
|
SNP ID:
sf1013555644(Gbrowse)
Chromosome: chr10 Position: 13555644 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 55.29% | 44.71% |
| All Indica | 799 | 72.34% | 27.66% |
| All Japonica | 496 | 19.15% | 80.85% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 66.67% | 33.33% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 60.66% | 39.34% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 67 | 37.31% | 62.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013555644 | T->C | INTERGENIC | None |