Detailed information of SNP:



SNP ID: sf1013562931(Gbrowse)

Chromosome: chr10

Position: 13562931
Major allele: T

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of A(minor allele)
All1341 69.65% 30.35%
All Indica799 99.37% 0.63%
All Japonica422 7.58% 92.42%
Aus67 98.51% 1.49%
Indica I375 100.00% 0.00%
Indica II213 99.06% 0.94%
Indica Intermediate211 98.58% 1.42%
Temperate Japonica329 0.61% 99.39%
Tropical Japonica49 57.14% 42.86%
Japonica Intermediate44 4.55% 95.45%
Group VI/Aromatic14 100.00% 0.00%
Intermediate39 71.79% 28.21%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1013562931 A->T INTERGENIC None