Detailed information of SNP:
|
SNP ID:
sf1013562931(Gbrowse)
Chromosome: chr10 Position: 13562931 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1341 | 69.65% | 30.35% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 422 | 7.58% | 92.42% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 329 | 0.61% | 99.39% |
| Tropical Japonica | 49 | 57.14% | 42.86% |
| Japonica Intermediate | 44 | 4.55% | 95.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013562931 | A->T | INTERGENIC | None |