Detailed information of SNP:
|
SNP ID:
sf1013567162(Gbrowse)
Chromosome: chr10 Position: 13567162 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 79.39% | 20.61% |
| All Indica | 797 | 72.77% | 27.23% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 67.20% | 32.80% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 209 | 61.72% | 38.28% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013567162 | G->A | INTERGENIC | None |