Detailed information of SNP:
|
SNP ID:
sf1013580054(Gbrowse)
Chromosome: chr10 Position: 13580054 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 75.52% | 24.48% |
| All Indica | 797 | 72.40% | 27.60% |
| All Japonica | 489 | 78.32% | 21.68% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 66.49% | 33.51% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 61.61% | 38.39% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 88 | 22.73% | 77.27% |
| Japonica Intermediate | 66 | 57.58% | 42.42% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 38 | 81.58% | 18.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013580054 | T->C | LOC_Os10g26330(LOC_Os10g26330.1) | INTRON |