Detailed information of SNP:
|
SNP ID:
sf1013580664(Gbrowse)
Chromosome: chr10 Position: 13580664 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 52.47% | 47.53% |
| All Indica | 796 | 29.02% | 70.98% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 33.42% | 66.58% |
| Indica II | 212 | 9.91% | 90.09% |
| Indica Intermediate | 210 | 40.48% | 59.52% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013580664 | T->C | INTERGENIC | None |