Detailed information of SNP:
|
SNP ID:
sf1013584300(Gbrowse)
Chromosome: chr10 Position: 13584300 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 72.30% | 27.70% |
| All Indica | 797 | 99.50% | 0.50% |
| All Japonica | 496 | 23.19% | 76.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 93 | 77.42% | 22.58% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013584300 | T->G | INTERGENIC | None |