Detailed information of SNP:
|
SNP ID:
sf1013607748(Gbrowse)
Chromosome: chr10 Position: 13607748 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1357 | 99.12% | 0.88% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 438 | 97.26% | 2.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 300 | 96.67% | 3.33% |
| Tropical Japonica | 71 | 98.59% | 1.41% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013607748 | C->T | LOC_Os10g26370(LOC_Os10g26370.1) | INTRON |