Detailed information of SNP:



SNP ID: sf1013607748(Gbrowse)

Chromosome: chr10

Position: 13607748
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1357 99.12% 0.88%
All Indica798 100.00% 0.00%
All Japonica438 97.26% 2.74%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II212 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica300 96.67% 3.33%
Tropical Japonica71 98.59% 1.41%
Japonica Intermediate67 98.51% 1.49%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1013607748 C->T LOC_Os10g26370(LOC_Os10g26370.1) INTRON