Detailed information of SNP:
|
SNP ID:
sf1013608913(Gbrowse)
Chromosome: chr10 Position: 13608913 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1325 | 72.75% | 27.25% |
| All Indica | 709 | 51.06% | 48.94% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 333 | 57.36% | 42.64% |
| Indica II | 183 | 34.97% | 65.03% |
| Indica Intermediate | 193 | 55.44% | 44.56% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 76.32% | 23.68% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013608913 | G->A | LOC_Os10g26370(LOC_Os10g26370.1) | Non-Synonymous SNP |