Detailed information of SNP:
|
SNP ID:
sf1013609582(Gbrowse)
Chromosome: chr10 Position: 13609582 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 67.20% | 32.80% |
| All Indica | 767 | 42.63% | 57.37% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 357 | 43.70% | 56.30% |
| Indica II | 202 | 29.70% | 70.30% |
| Indica Intermediate | 208 | 53.37% | 46.63% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013609582 | A->T | LOC_Os10g26370(LOC_Os10g26370.1) | SNPs that introduce stop codons |