Detailed information of SNP:
|
SNP ID:
sf1013610912(Gbrowse)
Chromosome: chr10 Position: 13610912 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1355 | 92.84% | 7.16% |
| All Indica | 756 | 89.68% | 10.32% |
| All Japonica | 478 | 97.28% | 2.72% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 352 | 89.77% | 10.23% |
| Indica II | 200 | 91.00% | 9.00% |
| Indica Intermediate | 204 | 88.24% | 11.76% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 79 | 89.87% | 10.13% |
| Japonica Intermediate | 64 | 95.31% | 4.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013610912 | T->C | LOC_Os10g26370(LOC_Os10g26370.1) | Synonymous |