Detailed information of SNP:
SNP ID:
sf1013614830(Gbrowse)
Chromosome: chr10 Position: 13614830 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1325 | 75.32% | 24.68% |
All Indica | 707 | 55.30% | 44.70% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 97.01% | 2.99% |
Indica I | 323 | 62.54% | 37.46% |
Indica II | 186 | 36.56% | 63.44% |
Indica Intermediate | 198 | 61.11% | 38.89% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1013614830 | T->C | LOC_Os10g26370(LOC_Os10g26370.1) | Synonymous |