Detailed information of SNP:
|
SNP ID:
sf1013614830(Gbrowse)
Chromosome: chr10 Position: 13614830 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1325 | 75.32% | 24.68% |
| All Indica | 707 | 55.30% | 44.70% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 323 | 62.54% | 37.46% |
| Indica II | 186 | 36.56% | 63.44% |
| Indica Intermediate | 198 | 61.11% | 38.89% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013614830 | T->C | LOC_Os10g26370(LOC_Os10g26370.1) | Synonymous |