Detailed information of SNP:
|
SNP ID:
sf1013615998(Gbrowse)
Chromosome: chr10 Position: 13615998 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1280 | 73.12% | 26.88% |
| All Indica | 663 | 51.28% | 48.72% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 306 | 58.50% | 41.50% |
| Indica II | 167 | 28.74% | 71.26% |
| Indica Intermediate | 190 | 59.47% | 40.53% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013615998 | G->A | LOC_Os10g26370(LOC_Os10g26370.1) | Synonymous |