Detailed information of SNP:
|
SNP ID:
sf1013618544(Gbrowse)
Chromosome: chr10 Position: 13618544 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1349 | 85.84% | 14.16% |
| All Indica | 734 | 74.80% | 25.20% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 334 | 57.78% | 42.22% |
| Indica II | 199 | 89.45% | 10.55% |
| Indica Intermediate | 201 | 88.56% | 11.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 83.78% | 16.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013618544 | C->T | INTERGENIC | None |