Detailed information of SNP:
SNP ID:
sf1013618544(Gbrowse)
Chromosome: chr10 Position: 13618544 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1349 | 85.84% | 14.16% |
All Indica | 734 | 74.80% | 25.20% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 334 | 57.78% | 42.22% |
Indica II | 199 | 89.45% | 10.55% |
Indica Intermediate | 201 | 88.56% | 11.44% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 37 | 83.78% | 16.22% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1013618544 | C->T | INTERGENIC | None |