Detailed information of SNP:
|
SNP ID:
sf1013621467(Gbrowse)
Chromosome: chr10 Position: 13621467 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 95.22% | 4.78% |
| All Indica | 783 | 91.83% | 8.17% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 94.81% | 5.19% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 205 | 81.95% | 18.05% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013621467 | G->A | INTERGENIC | None |