Detailed information of SNP:
|
SNP ID:
sf1013632805(Gbrowse)
Chromosome: chr10 Position: 13632805 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 50.28% | 49.72% |
| All Indica | 799 | 30.66% | 69.34% |
| All Japonica | 497 | 77.46% | 22.54% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 33.07% | 66.93% |
| Indica II | 213 | 16.43% | 83.57% |
| Indica Intermediate | 211 | 40.76% | 59.24% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013632805 | A->G | INTERGENIC | None |