Detailed information of SNP:
|
SNP ID:
sf1013664522(Gbrowse)
Chromosome: chr10 Position: 13664522 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 67.68% | 32.32% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 497 | 23.74% | 76.26% |
| Aus | 66 | 24.24% | 75.76% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013664522 | T->C | LOC_Os10g26420(LOC_Os10g26420.1) | Non-Synonymous SNP |