Detailed information of SNP:
|
SNP ID:
sf1013696383(Gbrowse)
Chromosome: chr10 Position: 13696383 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 88.51% | 11.49% |
| All Indica | 773 | 79.43% | 20.57% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 360 | 77.50% | 22.50% |
| Indica II | 209 | 89.00% | 11.00% |
| Indica Intermediate | 204 | 73.04% | 26.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013696383 | A->C | INTERGENIC | None |