Detailed information of SNP:
|
SNP ID:
sf1013729551(Gbrowse)
Chromosome: chr10 Position: 13729551 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 74.43% | 25.57% |
| All Indica | 797 | 72.02% | 27.98% |
| All Japonica | 472 | 75.85% | 24.15% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 39.44% | 60.56% |
| Indica Intermediate | 209 | 59.33% | 40.67% |
| Temperate Japonica | 313 | 97.12% | 2.88% |
| Tropical Japonica | 92 | 21.74% | 78.26% |
| Japonica Intermediate | 67 | 50.75% | 49.25% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013729551 | G->A | INTERGENIC | None |