Detailed information of SNP:
|
SNP ID:
sf1013731492(Gbrowse)
Chromosome: chr10 Position: 13731492 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 76.13% | 23.87% |
| All Indica | 796 | 73.99% | 26.01% |
| All Japonica | 497 | 77.26% | 22.74% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 44.60% | 55.40% |
| Indica Intermediate | 208 | 62.02% | 37.98% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013731492 | T->C | INTERGENIC | None |