Detailed information of SNP:
|
SNP ID:
sf1013750568(Gbrowse)
Chromosome: chr10 Position: 13750568 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 72.60% | 27.40% |
| All Indica | 779 | 52.37% | 47.63% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 35.68% | 64.32% |
| Indica II | 202 | 61.39% | 38.61% |
| Indica Intermediate | 207 | 73.43% | 26.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013750568 | G->A | INTERGENIC | None |