Detailed information of SNP:
|
SNP ID:
sf1013836622(Gbrowse)
Chromosome: chr10 Position: 13836622 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 60.33% | 39.67% |
| All Indica | 795 | 96.48% | 3.52% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013836622 | C->T | INTERGENIC | None |