Detailed information of SNP:
|
SNP ID:
sf1013957114(Gbrowse)
Chromosome: chr10 Position: 13957114 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1357 | 93.15% | 6.85% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 437 | 79.63% | 20.37% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 297 | 82.83% | 17.17% |
| Tropical Japonica | 85 | 89.41% | 10.59% |
| Japonica Intermediate | 55 | 47.27% | 52.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013957114 | C->A | INTERGENIC | None |