Detailed information of SNP:
|
SNP ID:
sf1013959123(Gbrowse)
Chromosome: chr10 Position: 13959123 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 96.08% | 3.92% |
| All Indica | 797 | 95.86% | 4.14% |
| All Japonica | 485 | 96.29% | 3.71% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 325 | 95.08% | 4.92% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013959123 | C->T | INTERGENIC | None |