Detailed information of SNP:
|
SNP ID:
sf1013961076(Gbrowse)
Chromosome: chr10 Position: 13961076 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1308 | 91.90% | 8.10% |
| All Indica | 695 | 85.61% | 14.39% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 63 | 98.41% | 1.59% |
| Indica I | 311 | 78.78% | 21.22% |
| Indica II | 201 | 94.53% | 5.47% |
| Indica Intermediate | 183 | 87.43% | 12.57% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013961076 | C->T | INTERGENIC | None |