Detailed information of SNP:
|
SNP ID:
sf1013961367(Gbrowse)
Chromosome: chr10 Position: 13961367 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 57.89% | 42.11% |
| All Indica | 794 | 92.32% | 7.68% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 373 | 93.83% | 6.17% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013961367 | T->C | INTERGENIC | None |