Detailed information of SNP:
|
SNP ID:
sf1013971116(Gbrowse)
Chromosome: chr10 Position: 13971116 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1346 | 89.67% | 10.33% |
| All Indica | 753 | 85.13% | 14.87% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 42 | 40.48% | 59.52% |
| Indica I | 344 | 79.07% | 20.93% |
| Indica II | 203 | 93.10% | 6.90% |
| Indica Intermediate | 206 | 87.38% | 12.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013971116 | C->T | INTERGENIC | None |