Detailed information of SNP:
|
SNP ID:
sf1014007815(Gbrowse)
Chromosome: chr10 Position: 14007815 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1366 | 93.48% | 6.52% |
| All Indica | 755 | 90.73% | 9.27% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 61 | 73.77% | 26.23% |
| Indica I | 356 | 88.76% | 11.24% |
| Indica II | 203 | 94.58% | 5.42% |
| Indica Intermediate | 196 | 90.31% | 9.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1014007815 | G->A | LOC_Os10g26830(LOC_Os10g26830.1) | Non-Synonymous SNP |