Detailed information of SNP:
|
SNP ID:
sf1014092774(Gbrowse)
Chromosome: chr10 Position: 14092774 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 97.28% | 2.72% |
| All Indica | 783 | 95.66% | 4.34% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 61 | 93.44% | 6.56% |
| Indica I | 369 | 98.10% | 1.90% |
| Indica II | 209 | 91.87% | 8.13% |
| Indica Intermediate | 205 | 95.12% | 4.88% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1014092774 | G->A | LOC_Os10g26920(LOC_Os10g26920.1) | Non-Synonymous SNP |