Detailed information of SNP:
|
SNP ID:
sf1014127161(Gbrowse)
Chromosome: chr10 Position: 14127161 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1382 | 94.14% | 5.86% |
| All Indica | 767 | 91.79% | 8.21% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 77.78% | 22.22% |
| Indica I | 354 | 86.72% | 13.28% |
| Indica II | 206 | 97.09% | 2.91% |
| Indica Intermediate | 207 | 95.17% | 4.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1014127161 | A->G | LOC_Os10g26960(LOC_Os10g26960.1) | Non-Synonymous SNP |