Detailed information of SNP:
|
SNP ID:
sf1014127996(Gbrowse)
Chromosome: chr10 Position: 14127996 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 52.58% | 47.42% |
| All Indica | 794 | 83.38% | 16.62% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 374 | 84.76% | 15.24% |
| Indica II | 211 | 85.78% | 14.22% |
| Indica Intermediate | 209 | 78.47% | 21.53% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1014127996 | A->C | INTERGENIC | None |