Detailed information of SNP:
|
SNP ID:
sf1014129253(Gbrowse)
Chromosome: chr10 Position: 14129253 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1353 | 52.03% | 47.97% |
| All Indica | 737 | 84.80% | 15.20% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 340 | 87.94% | 12.06% |
| Indica II | 201 | 86.57% | 13.43% |
| Indica Intermediate | 196 | 77.55% | 22.45% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 46.15% | 53.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1014129253 | T->G | INTERGENIC | None |