Detailed information of SNP:
|
SNP ID:
sf1014177769(Gbrowse)
Chromosome: chr10 Position: 14177769 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 74.38% | 25.62% |
| All Indica | 763 | 59.11% | 40.89% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 64 | 50.00% | 50.00% |
| Indica I | 356 | 56.46% | 43.54% |
| Indica II | 205 | 63.90% | 36.10% |
| Indica Intermediate | 202 | 58.91% | 41.09% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1014177769 | A->T | LOC_Os10g27040(LOC_Os10g27040.1) | INTRON |