Detailed information of SNP:
|
SNP ID:
sf1014179989(Gbrowse)
Chromosome: chr10 Position: 14179989 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1269 | 90.07% | 9.93% |
| All Indica | 666 | 84.23% | 15.77% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 53 | 67.92% | 32.08% |
| Indica I | 304 | 87.50% | 12.50% |
| Indica II | 179 | 76.54% | 23.46% |
| Indica Intermediate | 183 | 86.34% | 13.66% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1014179989 | G->A | LOC_Os10g27040(LOC_Os10g27040.1) | INTRON |