Detailed information of SNP:
|
SNP ID:
sf1014233108(Gbrowse)
Chromosome: chr10 Position: 14233108 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 84.78% | 15.22% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 464 | 57.33% | 42.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 318 | 71.70% | 28.30% |
| Tropical Japonica | 85 | 10.59% | 89.41% |
| Japonica Intermediate | 61 | 47.54% | 52.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1014233108 | C->A | LOC_Os10g27140(LOC_Os10g27140.1) | Non-Synonymous SNP |