Detailed information of SNP:
|
SNP ID:
sf1014323939(Gbrowse)
Chromosome: chr10 Position: 14323939 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 63.61% | 36.39% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 497 | 3.42% | 96.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1014323939 | T->C | LOC_Os10g27274(LOC_Os10g27274.1) | UTR_5_PRIME |
| sf1014323939 | T->C | LOC_Os10g27274(LOC_Os10g27274.3) | UTR_5_PRIME |
| sf1014323939 | T->C | LOC_Os10g27274(LOC_Os10g27274.2) | UTR_5_PRIME |
| sf1014323939 | T->C | LOC_Os10g27270(LOC_Os10g27270.1) | Non-Synonymous SNP |