Detailed information of SNP:
|
SNP ID:
sf1014395964(Gbrowse)
Chromosome: chr10 Position: 14395964 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1368 | 93.93% | 6.07% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 450 | 83.11% | 16.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 310 | 97.42% | 2.58% |
| Tropical Japonica | 76 | 31.58% | 68.42% |
| Japonica Intermediate | 64 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1014395964 | T->G | INTERGENIC | None |