Detailed information of SNP:
|
SNP ID:
sf1014461115(Gbrowse)
Chromosome: chr10 Position: 14461115 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 58.12% | 41.88% |
| All Indica | 798 | 89.72% | 10.28% |
| All Japonica | 496 | 0.60% | 99.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 78.77% | 21.23% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1014461115 | T->C | INTERGENIC | None |