Detailed information of SNP:
|
SNP ID:
sf1014526009(Gbrowse)
Chromosome: chr10 Position: 14526009 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1353 | 91.65% | 8.35% |
| All Indica | 735 | 85.31% | 14.69% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 350 | 92.86% | 7.14% |
| Indica II | 187 | 77.01% | 22.99% |
| Indica Intermediate | 198 | 79.80% | 20.20% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1014526009 | G->A | INTERGENIC | None |