Detailed information of SNP:
|
SNP ID:
sf1014559347(Gbrowse)
Chromosome: chr10 Position: 14559347 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 93.47% | 6.53% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 473 | 82.24% | 17.76% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 323 | 97.21% | 2.79% |
| Tropical Japonica | 86 | 31.40% | 68.60% |
| Japonica Intermediate | 64 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1014559347 | C->T | LOC_Os10g28180(LOC_Os10g28180.1) | Non-Synonymous SNP |