Detailed information of SNP:
|
SNP ID:
sf1014631643(Gbrowse)
Chromosome: chr10 Position: 14631643 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 84.84% | 15.16% |
| All Indica | 798 | 73.31% | 26.69% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 70.93% | 29.07% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 210 | 61.90% | 38.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1014631643 | G->T | LOC_Os10g28260(LOC_Os10g28260.1) | INTRON |
| sf1014631643 | G->T | LOC_Os10g28260(LOC_Os10g28260.1) | SNPs that disrupt splice sites |