Detailed information of SNP:
|
SNP ID:
sf1014641470(Gbrowse)
Chromosome: chr10 Position: 14641470 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1204 | 91.78% | 8.22% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 289 | 66.78% | 33.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 205 | 60.00% | 40.00% |
| Tropical Japonica | 44 | 97.73% | 2.27% |
| Japonica Intermediate | 40 | 67.50% | 32.50% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 91.89% | 8.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1014641470 | G->A | LOC_Os10g28290(LOC_Os10g28290.1) | INTRON |