Detailed information of SNP:
|
SNP ID:
sf1014762383(Gbrowse)
Chromosome: chr10 Position: 14762383 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 84.23% | 15.77% |
| All Indica | 783 | 72.67% | 27.33% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 366 | 73.22% | 26.78% |
| Indica II | 209 | 73.68% | 26.32% |
| Indica Intermediate | 208 | 70.67% | 29.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1014762383 | C->T | LOC_Os10g28510(LOC_Os10g28510.2) | UTR_3_PRIME |
| sf1014762383 | C->T | LOC_Os10g28510(LOC_Os10g28510.1) | UTR_3_PRIME |