Detailed information of SNP:
|
SNP ID:
sf1014939138(Gbrowse)
Chromosome: chr10 Position: 14939138 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 56.14% | 43.86% |
| All Indica | 791 | 90.14% | 9.86% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 370 | 91.89% | 8.11% |
| Indica II | 211 | 84.36% | 15.64% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1014939138 | G->A | INTERGENIC | None |