Detailed information of SNP:
|
SNP ID:
sf1014939564(Gbrowse)
Chromosome: chr10 Position: 14939564 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 58.26% | 41.74% |
| All Indica | 796 | 92.96% | 7.04% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 372 | 93.55% | 6.45% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1014939564 | G->A | LOC_Os10g28780(LOC_Os10g28780.1) | Synonymous |